PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_23650 (391 amino acids)

SeqID: AO353_23650 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15599399: periplasmic gluconolactonase, PpgL[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_23650
MKMRKLWPLLMAGSVGAMGLSSASAESFQLLVGTYTQGQSQGIYRLKFDSQSGQLDATPL
QVVKSANPSWLTLSSDQRRLFVVNENGPGQADPVGRVSSFAVEPNTHALSLINQVQSLGN
EPTHSSLSADGKYLFVSNYSVAEDPGGNLAALPVSTDGKLAPPVQLSSHQPSRVNPERQM
SAHVHSTVSSPDGQYVFANDLGADKVFVYRYDPKANPERPLTAATPASVQLPPGSGPRHL
LFSADGKHAYLTLEMSAQVAVFDYQAGKLTQRQMVDLAAGKPAAQKAAAALHASSDGKFL
YVSNRGTTNELLVFAIDPASGELKELQRRPVEGDHPREFSLDPSGKFVLVANQKSNQIVI
IARDVKTGLLGKTVQKLPFDSPSDIKFFLRQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory