PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_24770 (436 amino acids)

SeqID: AO353_24770 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600502: probable oxidoreductase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_24770
MNQIAINLSAEHARSYYNASANAMVQHPTLTSDLQADVCVIGGGFTGVNTAIELAQRGLS
VILLEGRRIGWGASGRNGGQLIRGIGHDVSGFARYVGQEGVRYLERAGIESVEVVGNRIR
EHGIDCDLRWGFCELANTPAQFAAFQVEQETLDAQGYAHATRLVRPEDMRQVVNSGVYAG
GLVDMGSGHLHPLNLVLGEARVAESLGVRIFEQSPVLEIIHGSTVQVRCAGGTVRAGSLV
LGCNAHLEDLEPRLSGKVLPAGSYIIATEPLSAQAAAELIPQNLALCDQKVGLDYYRLSA
DRRLLFGGACHYSGRDPTDIAAYMRPKMLKVFPQLTDVRIDYQWGGRIGITANRFPQVGR
LSQYPNVFYAQGYSGHGLNVTHWTARLLAEAIHAGHSHGLDVFSAVPHMTFPGGRALRTP
LLALGMLWHRLREVLG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory