PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_25205 (447 amino acids)

SeqID: AO353_25205 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [13 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1169431: DsdX permease]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_25205
MTPTYSLLTLGASILLIVVLIGKFRVHPFLSLIAASLLVGIGTGMAPTAIVSAFEKGMGS
TLGFLAGIIGLGSILGKLLEESGGAKRIATTLLRVLGEKNASWAMMLVGFIAGIPVFFEV
GFVLLIPLIYVVARQTRINVLYLGVPLAISLMVVHCILPPHPAATAITGMLNADIGKVIL
YGLIVGLPTAVIAGPIWVRLTCTREAPEGQAQFLAARSEAVIDDSKAPSFGIAMVTVLLP
LALMVGKTLAAPLLTKGSMTLEWVSFIGNPLIALALSICFAYWSLGLRRGLGMGALLNLT
NRCFPPLAGILLIIGAGGAFNDMLVGSGIGKALADVLGQSQINPIILAWLIAGLMHFAVG
SATVAMISTAGMVLPILGQHPEYSPEILVIAIGAGAIGWTHVTDSAFWVVKEYLGIPLSE
AIKKFTGATVLASSAALVFTLILSRFV