PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_25695 (554 amino acids)

SeqID: AO353_25695 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597595: pyoverdine synthetase D [Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_25695
MRDYLSATSQFNYQHTVDAALSGSLTALNACVECCDRHAIPGRIALFWEGRDGASATYTF
SDLQDKAARFANFLLAQGVKKGDKVAGLLPRNVELLIVVFATWRIGAVYQPLFTAFGPKA
IEHRLNSSGAAVVVTDAVNRPKLNDVADCPTIVTVGGPKGQGIVRGDFSFWAELPNYSAQ
CEPVLLDGEDPFLLMFTSGTTGPSKALSVPLKAIVAFQSYTRDAVDLRPEDAFWNVADPG
WAYGIYFGVTGPLSMGHPITFYDGPFTLESTCRVINKYGITNLTGSPTAYRLLIAGGDEF
ARSIKGKLRIVSSAGEPLNPEVIRWFADNLGVVIHDHYGQTELGMVLCNHHGLEHSVHVG
AAGFASPGHRIVVLDEAYNELSVGQPGILAIDRTQSPMCWFAGYEGAPTKAFVGNYYLSG
DTVELNPDGSISFVGRSDDVITTSGYRVGPFDVESALIEHPAVVEAAVIGKPDPERTELV
KAFVVLSAQYRASPELAEELRQHVRKRLAAHSYPREIEFVSELPKTPSGKLQRFILRNQE
IAKAQEATAKNVSA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory