PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_26645 (425 amino acids)

SeqID: AO353_26645 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129041: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_26645
MGTHVIKMPDIGEGIAEVELSVWHVKVGDMVVEDQVLADVMTDKAMVDIPSPVHGKVISL
GGEPGEVMAVGSILISIEVEGEGNVKASSQPAPAAPAPKPAPVAAPKVEAAIESKSAVPA
RPVAPQGPMIAREADERPLASPAVRKHALDAGIQLRLVRGTGPAGRILHEDLEAYLAQGQ
SNASSTVAAYAERNDEQQIPVIGMRRKIAQRMQDATQRAAHFSYVEEIDVTAVEELRAHL
NEKHGATRGKLTLLPFLVRAMVVALRDFPQINARYDDEAQVITRLGAVHVGVATQSDIGL
MVPVVRHAEARSLWDSAAEISRLATAARNGKASRDELSGSTITLTSLGALGGIVSTPVLN
LPEVAIVGVNKIVERPMVIKGQIVIRKMMNLSSSFDHRVVDGMDAAQFIQAIRGLLEQPA
TLFVE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory