PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_27910 (449 amino acids)

SeqID: AO353_27910 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 85700297: Inner membrane transport protein yeeF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_27910
MEIEEFGYKQELKRSLSLTDLVVYGMIFMIPIAPFGVYGYVNQEAPGMVPLAYIIGMVAM
LFTALSYGSMARAFPIAGSVYSYAQRGLHPHVGFIAGWLMLLDYLLIPPLLYVYAAMALN
HLYPDIPKVGFILAFLVSATFVNLRGITFTARMNIIFLLAQLVVLGIFLFYAWTALHGGA
GNGQLTLAPLYNPEHFNFALLMQAVSIAVLSFLGFDAISTLAEEIKGDPGRSVGKAALIT
LVVMGVIFVVQTWIATDLAAGMGFKSADTAFYEIAEIAAGSWLATVTGVATALAWGVAVA
ITSQAAVSRLLFGMARDGKLPKVLAKVHPKHNTPYISIYLVAVLSLLICYLFINSVDTLT
SLVNFGALSGFILLHLTVINYYWRRQKSGQLIRHLVCPVIGFIIVSAILYNMGVDAQKLG
GIWIAAGLVYLFFLNRIGASAVLPAPSNS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory