PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_28740 (302 amino acids)

SeqID: AO353_28740 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595490: N-carbamoylputrescine amidohydrolase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_28740
MTILTIATTQMPCTWDLKHNLDQAEQLVREAAAKGAQVILLQELFASPYFCIEQHHKHLA
LAEEYQHSAVLKRFAALARELGVVLPLSWFEKAGNAYFNSLSVADADGQLLGVYRKTHIP
NAIGYQEKEYFSPGDTGFRVWDTAFGRIGVGICWDQWFPETARCLALMGAEVLLFPTAIG
SEPGCVALDSRDHWQMTMRGHAAANLLPVVAANRIGREVATTDPTLQVNFYGSSFICNHK
GKLLAEADRDSTGVLVHSLDLSAMREERLTWGIYRDRRPDMYGALLSLDGRHINARWNTQ
GV