PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_29290 (427 amino acids)

SeqID: AO353_29290 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597972: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_29290
IMQKHVNSYYAATRNETIDFPVLEELVECDVCVIGAGYTGLSSALFLSEAGYSVTVLEAA
KVGYGASGRNGGQLVNSYSRDVDVIEERYGDKTAEVLGSMIFEGADIIRSRIKQYDIKCD
YKPGGIFAALNKKQLKGLAEQKSSWERYGNKNLRMLDAAEIKREVGCDNYVGGLLDMQGG
HIHPLNLALGEAAAIIGLGGKIYEQSAAVEITYGEPITVRTAKGVVRAKYLLIAGNAYLP
QDLDNRVTRKSMPCGSQIVVTEPLSAKVAKSLISNNYCVEDCNYLLDYYRLTADNRLLYG
GGVVYGAREPDDIEQLIRPKILKTFPQLKDVKIDYRWTGNFLLTMSRMPQFGRIEKNAYY
MQGYSGHGVTCSHLAGKLISEMIRGDAERFDAFASLPHMPMFGGRTFQAPLTAMGAAYYA
LRDRFGI