PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_00480 (282 amino acids)

SeqID: AO356_00480 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        OuterMembrane                 [matched 1172055: Major cell-binding factor precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    OuterMembrane          9.93
    Periplasmic            0.03
    Extracellular          0.03
    CytoplasmicMembrane    0.01
    Cytoplasmic            0.00
  Final Prediction:
    OuterMembrane          9.93

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_00480
MQRRPSLFKACVFLFAATTAAMGVAQAADSKLDSVLQRGKLIVGTGSTNAPWHFQGADGK
LQGFDIDIARMVAKGLFNDPEKVEFVVQSSDARIPNLLTDKVDMSCQFITVTASRAQQVA
FTLPYYREGVGLLLPANSKYKEIEDLKAAGDDVTVAVLQNVYAEELVHQALPKAKVDQYD
SVDLMYQAVNSGRADAAATDQSSVKYLMVQNPGRYRSPAYAWSPQTYACAVKRGDQDWLN
FVNTTLHEAMTGVEFPTYAASFKQWFGVELPSPAIGFPVEFK