PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_03380 (253 amino acids)

SeqID: AO356_03380 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 48474306: Imidazole glycerol phosphate synthase subunit hisF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_03380
MQRKRVIPCLLLKDRGLVKTVKFKSPKYVGDPVNAIRIFNEKEVDELVLLDIEASILGRE
PDYELLAEVAGECFMPICYGGGIRTLEHAQRVFALGVEKIALNTAALADVELLRKIADQF
GSQSVVCSIDCKKSLLGRYSVYSQSGTKDTKVSPVEWAKRVEDAGAGEIFLNSIDRDGTM
QGFDIPLIKSVVAGVHIPVVACGGAGSIADLNEPFEKAGVSAVAAGSFFVFHGKHKAVLI
SYPDLNQSMSGSK