PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_03385 (202 amino acids)

SeqID: AO356_03385 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 45593460: Imidazole glycerol phosphate synthase subunit hisH]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_03385
MIVVVDYGVGNIASVLNMLKRVGAKAKSSNLVDDIVNAEKLILPGVGAFDAGMKTLRESG
LIDVLNQQVLVARKPVMGVCLGSQMLGRRSEEGVEPGLGWIDMDIKRFEKRPERKVPHMG
WSHVSCNYEHPLVRGLTEESRYYFVHGYYMCPDNERDTLLTADYGQKFTAAVAKDNIFGF
QFHPEKSHRFGMQLFKNFVELI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory