PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_03560 (394 amino acids)

SeqID: AO356_03560 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598209: fatty-acid oxidation complex beta-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_03560
MREVVIVDSVRTGLAKSFRGKFNMTRPDDMAAHCVNALLARNDINPASVEDCIVGAGSNE
GAQGYNIGRNVAVLSQLGIGTAGMTLNRFCSSGLQAIAIAANQIASGCSDIIVAGGVESI
SLTMKSVNTDNLINPLLKEQVPGIYFPMGQTAEIVARRYQVSREEQDRYALQSQQRTAKA
QAAGLFDDEIIPMAVKYRVEDKNTGVVQILDGVVDHDDCNRPDTTYESLAGLKPVFAEDG
SVTAGNSSQLSDGASMTLVMSLEKALALGLKPKAFFRGFTVAGCEPDEMGIGPVFSVPKL
LKAKGLQIADIDLWELNEAFASQCLYSRDRLEIDPQKYNVNGGSISIGHPFGMTGSRQVG
HLVRELQRRNLRYGIVTMCVGGGMGATGLFEAVG