PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_05270 (418 amino acids)

SeqID: AO356_05270 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600364: arginine deiminase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_05270
MTTEKVKYGVHSEAGKLRKVMVCSPGLAHQRLTPNNCDELLFDDVIWVNQAKRDHFDFVT
KMRERGIDVLEMHNLLTDIVAIPEALDWILQRKITANSVGLGLVNEVGSWLRSLEPRHIA
EFLIGGVSADDLPDSFGGKTIQMFRDFLGHSSFILPPLPNTQFTRDTTCWIYGGVTLNPM
YWPARRQETLLASAIYKFHPEFTQADFQIWYGDPDQEHGNATLEGGDVMPIGNGVVLIGM
GERSSRQAIGQLALNLFKHKAVERVIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPEVVSQ
IVAFSLRPDESKPGGIDVRREEGSFLDTVAAALKLPALRVVETGGNSFAAEREQWDDGNN
VVAVEPGVVIGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHCMTCPIIRDPIDY