PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_07175 (454 amino acids)

SeqID: AO356_07175 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1170132: Probable glucarate transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_07175
MQATKPTHVRYLILLMLFLVTTINYADRATIAIAGSSLQKDLGIDAVTLGYIFSAFGWAY
VAGQIPGGWLLDRFGSKKIYALSIFTWSLFTVLQGYVGEFGMSTAVVALFMLRFLVGLAE
APSFPGNARIVAAWFPTAERGTASAIFNSAQYFATVLFAPLMGWIVYRFGWQHVFIVMGV
IGIVFSLIWLKVIYSPRQHPMINEAEFNHIAANGAMVDMDQDKGKEKKADGPKWDYIRQL
LTNRMMLGVYLGQYCINGITYFFLTWFPVYLVQERGMTILKAGFIASLPAICGFIGGVLG
GVISDYLLRKGHSLTFARKAPIIAGLLVSSSIVACNYVDIEWMVVGFMALAFFGKGVGAL
GWAVVSDTSPKQIAGLSGGLFNTFGNLASITTPIVIGYIISSTGSFKWALVFVGCNALMA
VFSYLVIVGPIKRVVLKEPTAKDAGISSLSEAKS