PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_07535 (467 amino acids)

SeqID: AO356_07535 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1176075: Hypothetical sodium-dependent transporter HI1690]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_07535
MSTDKVSVHGSWASRWVFILAATGSAVGLGSIWKFPYMVGVYGGGAFVLMFLACIALIGA
PVMLAETLIGRRARQSPANALKVLAVEAGHSTKWSWGAFAGMITALLILSFYSVVGGWSL
DYIIDMGRGDFQGATPDQVGAYFGNVIADPWRLTLWHTIFMVLSAVVIARGVVAGLERSL
RIMMPLLFVMILVLLGYSMTTGHFMEGVHFMFDFQPEKVLDGLLPAMGHAFFSLSVGVGS
IMIYGAYMPKNASLTRTVFGVALLDTFVSLLAGVALFPIVFAAGLNPSEGPGLMFVSLPF
AFGSMAFGQVMGVVFFVLVAIAAWSSAISLLEPMVAYLVERTRISRAWVTFWLAFTCWFV
GLGTVFSFNIWKQAKFFVNEGGLFHLYQWGATGGLDFFGVIDFFTSRIMLPLGGLCFVVF
AGWVMGRDAVRDELSLRSPVLFALSLFLMRYVAPIGILVVFAAQLWK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory