PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_07570 (955 amino acids)

SeqID: AO356_07570 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599966: probable ferredoxin[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_07570
MTLPAPFLRDVQQLIPQKRRFDDPLSTLAFGTDASFYRLIPKLVVRVESEDEVIALLKLA
QRDQVPVTFRAAGTSLSGQAISDSVLIVLGDNWNGREIREQGTQIRLQPGVIGAQANAWL
APFGRKIGPDPASINACKIGGIVANNASGMCCGTAQNTYHTLAGIRLVLADGTRLDTEDD
NSVAAFRTSHGELLERLATLGRETRANTELAARIRHKYRLKNTTGLSLNALVDFDEPVDI
LSHLLVGSEGTLGFISAVTYNTVIDHPNKASALIVFPDVETCCNAVTVLKSQPVSAVELL
DRRSLRSVQDKPGMPDFVQHLSINACALLIESRAASSSLLQEQLARIMTSLAGFPVEKQV
DFTEDPRENARLWAIRKDTFPAVGAVRKTGTTVIIEDVTFPVEQLALGVNRLIELFDKHH
YDEAILFGHALEGNLHFVFTQGFNSAEEVARYQAFMDDVAHLVAVEFGGSLKAEHGTGRN
MAPFVELEWGSDAYQLMWQLKRLLDPNGILNPDVVLSEDPQIHLKHLKPLPAADEIVDKC
IECGFCEPVCPSKDLTLSPRQRIVIWRDIQAKKRAGTDTTELERAYQYQGIDTCAATGLC
AQRCPVGINTGELVKKLRSRDATKTKTANWIEGNFATTLQGARFALHVANGARMLLGAPR
LAKLSASLTRLSKGQVPQWTNAMPQPEKAIRFSPTVSDERPRVVYLAACVSRVMGPTAAD
KEQMSLYDKTRSLLEKAGYQVVFPDNVDSLCCGQPFASKGYTEQAEHKRQELIGALLHAS
RGGLDPIYCDTSPCTLRLVQDLGDVRLDLYDPVRFIRTHLMERLDFIPQEAPIAVHVTCS
TQHLGESQALIDLARKCSKNVVIPEGIHCCGFAGDKGFTTPELNAHSLRTLKDAVQYCTE
GISTSRTCEIGLTRHSEIDYHGLVYLVDRVTRSKTATMEGGSPVSVKKSNSCDSL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory