PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_08735 (404 amino acids)

SeqID: AO356_08735 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600153: probable phosphoserine phosphatase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_08735
LREIVLINITGSDRPGLTAAITGVLAQGGVNILDIGQAVIHDTLSFGILVEIPDAEQSKS
VLKDILFTAYKLDQQVRFTPVSEEDYQHWVAGQGKKRHIVTLLTRKVTAEQLQRVSSITA
QYGLNIDHIDRLSGRMPLDTPADKGKGCIEFSVRGEPADPQALRAEFLSVAQELNVDIAF
QEDSLFRRNRRLAVFDMDSTLIEAEVIDELAKAAGVGDKVSAITERAMAGELDFRASFKE
RLALLKGLDVSVLDSIGASLRLTEGAETLFAELKRLGYKTAILSGGFTYFAKQLQAKLGI
DYVFANELEVVDGKVTGVAVEPIVDAQRKADLLRELAAKEGLRLEQTIAVGDGANDLPML
AIAGLGVAFRAKPLVKQSARQAISTLGLDGVLYLLGFRDRDGQL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory