PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_09595 (400 amino acids)

SeqID: AO356_09595 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600285: imidazolone-5-propionate hydrolase HutI[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_09595
MKTLWQNCHAATMAQGVYSIIEDAAIVTQGEHIHWIGPRAELPMGDYPAVNDLKGAWVTP
GLIDCHTHTVFGGNRSGEFEQRLQGVSYAEIAAAGGGIASTVRATRAASEDELFASAAKR
LKGLMHDGVTTVEIKSGYGLDLASERKILRVIRRLGAELPVSVRSTCLAAHALPPEYKDR
ADDYIEHICTEMLPALAAEGLVDAVDAFCEYLAFSPAQVERVFITARQLGLPVKLHAEQL
SSLHGSSLAARYQALSADHLEFMTEDDAKAMAASGTVAVLLPGAFYFLRETQLPPMDALR
KHGVKIAVASDLNPGTSPALSLRLMLNMACTCFRMTPEEALAGATIHAAQALGMAQTHGS
LEVGKVADFVAWHIDRPADLAYWLGGDLEKRVVRHGVEID

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory