PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_10235 (266 amino acids)

SeqID: AO356_10235 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 84028140: Cystine-binding periplasmic protein precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_10235
MNFSALRRNLLVGSLGLALSAGLLGQAVAGEQLQKIKDAGEIKIGLEGTYPPFSFVDDSG
KLTGFEVEFSEALAKELGVKVKLQTTPWAGILAALESKRLDAVVNQVTISEERKKKYDFS
EPYTVSGIQALVLTKKADELNIKKAADLDGKKVGVGLGTNYEQWVKAEVPGAQVKTYDDD
PTKFQDLRVGRIDTILIDRLAALEYAKKAKDTTVTSEAFSRQEAGIALRKGEPELLAAVN
KAIEKLRADGTLKKLSEKYFSADVTQ