PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_11880 (466 amino acids)

SeqID: AO356_11880 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 399391: Dihydrolipoyl dehydrogenase 3]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_11880
MSNYDVVILGGGPGGYNAAIRAGQLGLKAACVEGRATLGGTCLNVGCMPSKALLHASELY
EAATGTEFANLGIEVSPTLNLAQMMKQKDESVTGLTKGIEFLFRKNKVDWIKGWGHIDGP
GKVTVTGDDGSKTELTAKDIVIATGSEPMPLPGVTIDNQRILDSTGALSLSEVPRHLVVI
GAGVIGLELGSVWRRLGAQVTVVEYLDRICPGVDGEAGKTLQRALAKQGIQFKLSSKVTG
ATTSASGVQLQIEPAAGGEAQILDADYVLVAIGRRPYTQGLGLENVGLSTDKRGMLANQH
HRTEAPGVWVIGDVTAGPMLAHKAEDEAMACIEQIAGKAAEVNYALIPSVIYTRPELASV
GQTEEQLKAEGRAYKVGKFPFTANSRAKINHETEGFAKVLADERTDEILGVHLVGPSVSE
MIGEYCVAMEFSASAEDIALTCHPHPTRSEALRQAAMNVEGMATQM

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory