PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_13790 (567 amino acids)

SeqID: AO356_13790 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 114919: Choline dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_13790
MSQEFDYIIIGAGSAGNTLATRLTEDEGITVLLLEAGGPDYRLDFRTQMPAALAFPLQGR
RYNWAYETDPEPHMNGRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWAKLPGLEDWTY
LDCLPYFRKAETRDIGPNDYHGGDGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTEDLNG
YQQEGFGPMDRTVTPNGRRASTARGYLDVAKKRSTLTIVTHALTDKIIFEGKRAVGVRYL
VGAAEERVEARARKEVLLCSGAIASPQILQRSGVGPAQLLESLDIPVVHDLPGVGENLQD
HLELYLQYACTQPVSLYPSLLWYNQPAIGAEWLFNGTGIGASNQFEAGGFIRTRPDFDWP
NIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPSRGRIQAKSKDPRQHPSILFNYMATE
QDWQEFRDGIRLTREIMQQPALDPFRGREISPGIEVQTDAQLDQFIREHAETAFHPSCSC
KMGTDDMAVVDGEGRVHGMQGLRVVDASIMPIITTGNLNAPTIMIAEKIADKIRGRKPLP
RSTAPYYVAGDAPVRGKPLREVGPMAQ