PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_14140 (392 amino acids)

SeqID: AO356_14140 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595698: 8-amino-7-oxononanoate synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_14140
MPFDLAARLAARRANNLYRQRPLLESPQGPEVVVDGQPLLAFCNNDYLGLANHPQVIEAW
RAGAARWGVGGGASHLVIGHSSPHHALEEALADLTGRPRALLFTTGYMANLGAVTALVGQ
GDTVLEDRLNHASLLDAGLLSGARFNRYLHNDAQSLASRLEKATGNTLVVTDGVFSMDGD
IADLPALAREAKARGAWLMVDDAHGFGPLGGHGGGIVEHFGLSQDDVPVLVGTLGKAFGT
AGAFVAGSEELIESLIQFARPYIYTTSQPPALACATLKSLELLRGEHWRREHLQVLIRQF
RQGAEQIGLQLMDSFTPIQPILVGDAGRAMRLSQMLRERGLMVTAIRPPTVPAGSARLRV
TLTAAHSEAQVQLLLNALAECFALLGPEPSHA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory