PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_15445 (549 amino acids)

SeqID: AO356_15445 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599167: probable acyl-CoA dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_15445
MNLHQFAETHDVTNQPPSLDGANLYRIDLPLQQWSQRFGAGWAQARIDAYGALAGGPLME
AGFLANQNKPVFSSHDRYGHRIDLVEFHPAYHQLMRTAVEHGLPSLPWAHPQPGAHVARA
SMTYLHSQAEAGTGCPLTMTFASVPALRLQPDLAERWLPKVLATEYDPRNVGMAHKAGVT
LGMAMTEKQGGTDVRTNTTKAYPVGASGPGQAYELVGHKWFCSAPMCDAFLTLAQTDKGL
TCFLLPRHRPDDTRNQFYIQRLKNKLGNCSNASSEVEFRGALAWMVGEEGRGVPTIIEMV
AMTRFDCMVGSSALMRQALTQASHHCAHRKVGGKLLSEQPLMQNVLADLALESEAALALS
LRMGRALDHLNDEHEAKFARLVTAVGKYWICKRAPAMINEAAECMGGAGYVEDSILPRLY
REAPVNSTWEGSGNVQCLDVLRALSKEPGVLEVLFSELGDGHGDKRLAGHIHQLQAAFKD
TDDIQYRARQLTEDIAVGLQAKLLLEAGNSEVSDAFIASRLGSTGRVYGALPRGLNVEAI
VTRSTPHAF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory