PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_16720 (416 amino acids)

SeqID: AO356_16720 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_16720
MSSETISQSISIVHPVSLSHGRNAEVWDTDGKRYIDFVGGIGVLNLGHCHPRIVEAIREQ
ATRLTHYAFNAAPHAPYIELMERLAAFVPVDYPVSGMLTNSGAEAAENALKIVRGATGRT
AVIAFDGAFHGRTLATLNLNGKVAPYKQKVGVLPGPVYHLPYPSQDNGVTCAEALKAMER
LFSVEIDVNDVACFIVEPVQGEAGFLAMDVPFAQALRQFCDDKGIVLIIDEIQSGFGRTG
QRFAFSRLGIEPDLILLGKSIAGGVPLGAVVGRKALLDNLPKGGLGGTYSGNPIACAAAL
ATLDEMTDANLHAWGVQQQEAIVSRYESWRSRGLSPYLGRLTGIGAMRGIELSQADGTPA
SAQLTQLLALARESGLLLMPSGKSRHIVRLLAPLTTEPAVLEEGLDILEACLAKLA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory