PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_17600 (804 amino acids)

SeqID: AO356_17600 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 118555: Alcohol dehydrogenase [acceptor] precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.86
    Periplasmic            0.14
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.86

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_17600
MSTEGALSRSRLLPSLLGILLLLMGLALLAGGVKLSTLGGSWYYLLAGIGLALTGVLLIM
ARRAALGLYALVLFASTVWALWEVGLDWWQLVPRLAMLFALGIVMLLPWFRRPLLTADAS
ATGTRALGAAVVIAGVAALASQFTNPGEIKGQLDRDAVPGMTNTAPAMPDGDWNSYGRSA
HGDRYSPLAQITPENVSKLKEAWTYRTGDLPGPNDPGETTAENTPLKVNGMLYVCTPHSQ
VIALEPETGKEIWRFDPKLSTQKAENFKGWAHMTCRGVTYHDDAVYASAEQSPTGTASTA
PASTVCPRRIFLPTADTRLIALNADTGKMCEDFGDKGQVDLTANIGGFTAGGYYSTSPPA
VTQNLVVIGGHVTDNVSTDEPSGVIRAYDVHTGKLVWNWDSGNPDDTTPIAEGQTYTRNS
PNMWSMFSVDEKLGMLYLPMGNQTPDQFGGLRTPESEKYAAGLTALDIATGKVRWYFQFT
HHDLWDMDVGGQPTLMNMKTADGVKPAVLASTKQGSIYVLDRSNGQPIVPIKEIPVPQGA
VEGDHTSPTQPMSDLNFVPPVLKERDMWGVTPFDQMLCRIDFKSLRYDGMFTPPSLQGSI
VYPGNFGVFDWGGISVDPVRQIAFVNPSYMAFKSKLVPAAEVAGGPGRKSETEGVQPNKG
APYGVILEALLSPMGLPCQAPAWGYVAAVDLTNNKTLWKHKNGTVRDSSPVPIPLSMGVP
SLGGTFTTGSGLAFLSGTLDQYLRAYDVKNGKQLWEGRLPAGAQTTPMTYTGKDGKQYVL
VVAGGHGSLGTKQGDYVIAYKLPD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory