PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_18735 (341 amino acids)

SeqID: AO356_18735 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596094: arginine/ornithine succinyltransferase AII subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_18735
MIVRPVRSSDLPALIALARSTGTGLTTLPANEERLAHRVGWAEKTFRGEAGRGDADYLFV
LEDDDGRVVGISAIAGAVGLREPWYNFRVGLTVSASQELNIYREIPTLFLANDLTGNSEL
CSLFLHADYRSGLNGRMLAKARLLFIAEFPQLFGNKIIAEMRGMSDDNGRSPFWESLGRH
FFKMEFSQADYLTGVGNKAFIAELMPKFPLYTCFLSEGARAVIGQVHPDTEPALSMLKSE
GFSYQGYVDIFDAGPAVECETGKIRAIRDSQALVLAIGTPGDDATPFLIHNRKREDCRIT
AAPARFAAGTLVVDPLTAKRLQLNAGDQVRAVALSAARESK