PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_20400 (714 amino acids)

SeqID: AO356_20400 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596934: probable 3-hydroxyacyl-CoA dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_20400
MTAAIRYETGQDRIVVLTLDMPGQSANTMNARYREAMAACVTRLKAEKDAIAGVIITSAK
QTFFAGGDLNELVKVGKPEAKAFYDMVLLLKAQLRALETLGKPVVAAINGAALGGGWEIC
LACHHRVALEQPSVQLGLPEVTLGLLPGGGGVVRMVRLLGLEKALPYLLEGKKVSAQQAL
QAGLIDELAKDREELLAKSRAWILANPSVVQPWDAKGYRLPGGTPSDPKVGQMLAIAPSI
LRNKTQGCLPAPEKILCAAVEGAQVDFDTAHLIETRYFTELTTGQVAKNLIGTLWFQLNE
IKAGGSRPQGVAPYLTKKVGVLGAGMMGAGIAYVSAVAGIAVVLKDVDLTAAEKGKARSA
ALLDKKVARGQLTAEQREATLARIQATDNNADLAGCDLIIEAVFEDRALKASVSAAAQAV
AGDDTVIASNTSTLPITGLAMAVPDPTKFIGLHFFSPVEKMPLVEIIKGARTSDATLARG
FDFVLQINKTPIVVNDSRGFFTSRVFGTFTNEGIAMLGEGVSAPMIETEARKAGMPVGPL
AISDEVSLSLMSHIRAQTAKDLHAEGKTPIEHPAFAVIDLLLNEYKRPGKAAGAGFYEYP
ANGQKYLWPQLKSRFEQADGQISPQDIRDRLLFIQALETVRCVEEGVLTSTADANIGSIF
GIGFAAWTGGALQFINQYGLQDFVDRSQYLAEQYGERFSPPALLLEKAARHELF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory