PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_22315 (587 amino acids)

SeqID: AO356_22315 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [14 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2495662: Glycolate permease glcA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_22315
MVWQQVYDPFGNAVLSTLLAAVPVVVMLASLAFFHVKAHLAALLALASALLIAIFAFGMP
VGMAGSAALYGAANGLLPIGWIVLNIIFLHRLTTENGSFKVLQDSLARITDDRRLQLLLI
AFCFGAFFEGAAGFGTPVAVTGAILIGLGFSPLAASGLALIANTAPVAFGALGTPIITLA
KVTGLDEMELSMMVGRQLPFFSVLVPFWLIWAFAGWRKMLEVWPAILVAGVSFAIPQFLV
SNYHGPMLVDVIAALISMACLTGFLKVWKPATVHTSAALSGRVDNSKIDASEDEKPTASA
AFSNDARPAVGRAWMPWIILTVFVFAWGTQGFKNLFDTRPALDPQTQSAKLDPQSKPMRE
ANPIFSPLVTFGTIHQQIEKVPPVVPQPKTEEAVYKFNWFTATGSGIFLAAILGGLLMGY
SIPQLVHHYLRTLWVVRYSLITIVAMLALGFLTRYSGLDATMGLAFAATGIFYPMFGTLL
GWLGVALTGSDTASNVLFGGLQRVTSEQLGISPVLMAAANSSGGVMGKMVDAQSIVVAST
ATRWYGHEGEILRYVFFHSVVLAILVGGLVTLQAYVAPFTHMVVGGQ