PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_22980 (422 amino acids)

SeqID: AO356_22980 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129041: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_22980
MGTHVIKMPDIGEGIAEVELSVWHVKVGDMVVEDQVLADVMTDKAMVDIPSPVHGRVIAL
GGEPGEVMAVGSELIRIEVEGAGNLKESAQPAPAAAAAQAPKPAPVATPEPVLEKTAAPR
PAPQAPVARDPDERPLASPAVRKHALDLGIQLRLVQGSGPAGRVLHEDLEAYLAQGPSSQ
AKGGSGYAERHDEQQIPVIGMRRKIAQRMQEATQRAAHFSYVEEIDVTALEELRVHLNEK
HGASRGKLTLLPFLVRALVVALRDFPQMNARYDDEAQVINRSGAVHVGVATQSDVGLMVP
VVRHAEARTLWDSAAEIARLATAARTGKASRDELSGSTITLTSLGALGGIVSTPVLNLPE
VAIVGVNKIVERPMVIKGQIVIRKMMNLSSSFDHRVVDGMDAAQFIQALRGLLEQPATLF
VE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory