PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_24385 (426 amino acids)

SeqID: AO356_24385 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 77416590: Serine transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_24385
MNDQANSVEERFETTVPATLSQWSRQDTTWMLGLFGTAIGAGTLFLPINAGLGGFWPLLI
LALLAFPMTFYAHRGLTRFVLSGRDGADITEVVEEHFGLKAGALITLLYFFAIFPILLIY
SVALTNTVGSFLEHQLHIQPPPRAVLSLVLILGLLAVVRCGEQAIVKAMSLMVYPFIVAL
LFLAVFLIPHWSGGILSTASTPPEPSALLHTLWLAIPVMVFSFNHSPIISAFAVDQKRRY
GANAEERSSQILSRAHVLMVVMVLFFVFSCVLTLTPAQLAEAKAQNLSILSYLANHFSNP
TIAFAAPLIAFVAISKSFLGHYIGASEGLKGLIVKSGRRPAPKTLDRLTAAFMLVVCWIV
ATLNPSILGMIETLGGPVIAAILFLMPMYAIRKVPAMARYRGQASNVFVVLVGLVAITAL
VYSLMA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory