PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_24685 (326 amino acids)

SeqID: AO356_24685 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 132127: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_24685
MSEFDVLSFGETMAMLVADQRGDLASVDQFHKRIAGADSNVAIGLSRLGFKVAWLSRVGA
DSLGRFVTQTLENEGLDCRHVAVDPEHPTGFQFKSLTVDGSDPQVEYFRRSSAASHLSVG
SIAPALLDARHVHATGIVPALSGTAREMSFELMSRMRAAGRSLSFDPNLRPSLWGSESTM
ITAINRLAALAHWVLPGLGEGRLLTGFDDPADIAAFYLDQGAEIVVIKLGADGAYYRTAL
DQGVIPGVPVAQVVDTVGAGDGFAVGLISALLEGRAITEAVQRANWIGSRAVQSRGDMEG
LPTRIELLAEFETADREQARSHMASS