PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_26145 (477 amino acids)

SeqID: AO356_26145 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595944: probable aldehyde dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_26145
MSSVPVFQNFINGQFTHSEAHLDVFNPATGALLSRVPASNAADVDQALATARAAQKDWSA
KPAIERAGYLRRIAAKLRENVAHLAHTITLEQGKISALAEVEVHFTADYLDYMAEWARRI
EGEIITSDRPGENIFLFRKPLGVVAGILPWNFPFFLIARKMAPALLTGNTIVIKPSEETP
NNCFEFARLVAATDLPPGVFNVVCGDGQVGAALSGHKGVDMISFTGSVATGSRIMTAAAP
NITKLNLELGGKAPAIVLADADLALAVKAIRDSRIINTGQVCNCAERVYVERKVADQFIE
RISAAMSATRYGDPIAEADVEMGPLINRQGLDSVEHKVRTALSQGASLVSGGSVADRSSG
FHFQPTVLAGCNASMDIMREEIFGPVLPIQIIDDLDEAIALANDCDYGLTSSIYTRDLSR
AMHAIRGLDFGETYVNRENFEAMQGFHAGVRKSGIGGADGKHGLYEYTHTHAVYLQS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory