PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_26665 (999 amino acids)

SeqID: AO356_26665 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_26665
MTSFQPATESQTGHIGARQTRVEDAALLRGLGCYADDAAIPPGTLHAAIIRSPHAHARIT
SVDFSSALLMKGVHGVLVGEDVKRWALPFPVGVRQPMEHWCVAVDKVRYVGEPVAVVIAE
SRYLAEDAIEGVRVEYEPLPPIIDPERATAEQAPILHEAVGSNVVNERRFRYGEPEQAFE
QAPHKVSLKVKFPRSSCTPIECYVVLAQYERATGIYDVLANFQGPYALHTVMARALNVPG
NRLRLRTPKDSGGSFGIKQGVFPYVVMMGLASRKVGAPVKWVEDRLEHLQGASSATNRVT
EIEAAVEADGRITALRYDQIDDCGAYLRAPEPATFYRMHGNLTGAYAIRNLQVRNRVVLT
NKTPSGLNRGFGGPQVYFALERLMQHIAVQLKLDPLDVIRRNLVPADAFPYRAAAGALLD
SGNYQAGIALAAADGGLDELLKRRDQARAEGRIYGIGYAAVIEPSISNMGYITTAMTPEE
RRKAGPKNGAVATATINVGPLGDVSVHVSSAPQGQGHQTTVAQVVAEVLGVALESIVVNV
ELDTQKDAWSIASGNYSSRFAGAVAGAVYKAALKIRDRLAAIAAEQLQASPEDIRFAGGK
IFVVNGGAVAPFHRIAGATHWSPGLLPEGESGGLRETAFWSPPQLVAPDDQDQVNSSLCY
GFVFDICGLEIDRMTGEIHIDRYVTCHDAGRLLNPALVDGQIRGGFTQGLGAALMEEFAY
GEDGSFLSGTFADYLVPTAPEAIEPVILHMETPSPFTPLGAKGVGEGNNMSTPVCIANAV
ADALGRSDIRLPLTPSKVRTLIGIDEPPRPAGMEPDEDLDAAPAGGPALRANDSVVIPAS
PQQVFDTLLDPQTLAAIIPGCHDLVLEGENRYRADVTVGVGMIRARFEAKVALSDLDPPH
SLRLSGSGSSSMGSAQGQAKVRFVELENGHTRLEYQYQVAVSGKVAAVGGRMLQGASKVI
IGQIFTRLSQRVSGQAISTSWWARLRASLGAMFGKGGAQ