PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_26900 (747 amino acids)

SeqID: AO356_26900 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.97
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_26900
MLNEIFPNELPRALQHMLERDEADGPAALPRRSFLKIVGIGGLALGAFPHLALAQEANGA
VAAPLKPTQQPSAFVQIAPNGEVTVTINRLEFGQGVQTGLPMILAEELDADWSLVRSRNG
SNDAAYMDPAFGIHLTGGSNTIKNSYTQYRELGARARAMLLSAAAARWNVDVASLSTQAG
MVLGPAGRKASYGELAQAAMAMPVPEQITLKDPKDFRIIGQATTRIDAKAKSSGQQDFGI
DMHLPGQLTAVVARPPVFGARIAALDDSAARATKGVKAVLRVPLDGGAEGVAVVADSYWQ
AKLARDALKVEWNASAVEKLDSEKQLAQYRELASQPGPLHFDADMTPLATAPHRLEAEFL
FPYLAHAPMEPLNCTVQLAGKNGAQLWVGTQFPGGDAAAAAKVLDLKPEQIQVNVQTAGG
GFGRRGVPTNDFVVLACEVAKAARTAGVDAPIRTLWSREDDIKGGYYRPMHLHRARIGFD
DSGKVLAWDHALVGQSIITGTVFGGRVKNGIDPTATEGLRDPYPLPMRLTVHHPKLNVPV
LWWRSVGSTHTAFVMETLIDEIARTTKQDPVAYRMKLFGDQSPRHRAALQLAVDKSEYGK
RQLPAGRAWGVAVHESFSSVVAYVVEASVQDGRPVLHNVTAGVHCNLAVNPRSVEAQVQG
AALMGLSMCLPGGAITLKDGVVQQSNFADFSVPRITDMPEFAVHIVPSAEPPTGMGEPGL
PALAPAFANAVASLTGKPMRELPFKLA