PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_27230 (871 amino acids)

SeqID: AO356_27230 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_27230
MSRWQQISPFEQHVNPAVGELIRRVGLDKTFVRGEGCYLYDAQGRAYLDFLGAYGALPFG
HSPDALLAELASFQLSREPIFVQPSSLAASGLLAQRLLAIAPGDYRSVTFQNSGAETVEA
ALKACLIKTGRKRILSTHQSFHGKTLGALSATGSDKYQEGFQAPLPGFDFVDYGDIQALE
DQLQRHPDAYAAVIIEPVQGEGGINLPPPEYLQQIRAACDRSGTLLIIDEVQTGLGRTGQ
MFASAGVQADCLLLAKALGGGVMPIGACLISKNAYSEDFQNKHSSTFGGNTLACRIGLKV
LDLLDERQDLLDSVRDNGRYLLEQLNELAARHASFIKEVRGAGYLIGIEFDLDRSHYPQF
YGGFTGIMGEQESLVPILASYLLNVEGVRVAPTLNGANVMRVEPPLIAGRAECEVFIQAL
ARTLQWVEEGRTGTLLAHLLDAQPCSSGPPPAPLHQISFTEAVPDNHFAFVLHPLELSNY
AEFDESLSHYSQQSLRMLEERLNPLMDPFFVSTVELTSPATGRRVTGDLIMVPRSAAQFA
AMPIEESCELIGQAIDMAKQRGATLVGLGGHTSIVTGGGLRLLDKGVALTTGNSYTLLTA
VEASCRAVEMTGRRMQDMRVAVIGATGSIGSAIARLIAMQAGQVTLVGNPMSARFNTPRF
ASVITQLVSFCTQGVPAPGSVLAGIAERLNEHDSADLAALLLTENGERTALRWSNDINLS
LADADLVLIATNSAERFISADDIAEGAILCDISRPANVSQDISSRRPDVLVLDGGIVEMP
GEARLGSRYGIPQDLAYACMAETMMLALEGISCHTSLGLDLSNDDLELVQSLSVRHGFML
AGFRSFDKALDPDQWRRYAERFSTATAVETI