PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_29050 (1015 amino acids)

SeqID: AO356_29050 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599966: probable ferredoxin[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_29050
MIARLSPPDPQKATYDAFLNALQVAGFQGEIARDHGDRTVLATDNSIYQRLPQAAVFPLD
EQDVMILSRLAAEPAHRAVVLTPRGGGTGTNGQSLTDGVVVDLSRHLNNILEINVEERWA
RVQNGVVKDQLNAALKPYGLFFAPELSTSNRATIGGMINTDASGQGSCTYGKTRDHVLEL
STVLLGGARLTSSAVDAALLSALVERQDRVGEVYQCALDIADTHAELIRDTFPKLNRCLT
GYDLAHLREPDGRFNLNSVLCGSEGSLGFIVEAKLNVLPIPTYSILVNVRYAGFMEALRD
AKALMAMKPLSIETVDSKVLMLAMKDIVWHGVAEYFPEDPDRPTLGINLIEFSGDDEAAV
QQQVHEFVLHLQRDTSVVRLGHTLAIGADALKRVYAMRKRAVGLLGNVKGEARPQPFVED
TAVPPEHLADFIQAFRALLDRHDLQYGMFGHVDAGVLHVRPILDMKDPTQAALIRPISDA
VAALTQQYGGLLWGEHGKGLRSQYVPDYFGDLYPALQALKAAFDPFNQLNPGKIATPNTL
PGARLTRVDEVQMRGALDRTIDERVWQSYDTAVHCNGNGACYNFDPDDAMCPSWKATRNR
IHSPKGRASLIREWLRLQGEQGVDVLAASERVRGAGGAPGVARRAVNSLARKMGQPDFSH
EVYEAMSGCLACKSCAGQCPVKVNVPEFRSRFLELYHSRYLRPLKDYLIGSLEYTVPYLA
KMPRLYNFVMSARPIRWGLERVAGMVDSPLLSLVDFAAVCRRWNVEVATPERLEALSAEQ
REKSVILVQDAFTRFFETPLLVDWVELISRLGYRVFLAPYAPNGKPLQVQGFLKAFEKAA
SFNGQTLLSLQQYRVPLVGLDPAMTLVYRQEYAKILDAGNAPQVMLAQEWLMNALPEDAA
VEEQEPYHFLPHCTEKTNEPGSIGQWQKIFQRMGLTLQVQASGCCGMSGTYGHETRNAGT
SDTIYGQSWKPLLQKLNRSGRVVADGYSCRSQVKRQEGVAVLHPLQVLLARVKGV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory