PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_29225 (308 amino acids)

SeqID: AO356_29225 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141669: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_29225
MRRCTLLFATLLLLFSQWAAAEYRIGVSIARVDDNFMTYVRNGLDEAAKKENVQIQFEDA
QGDVVRQLNQVQGFINQKVDAVIVLPVDTSATANITRAAVEAKTPLVYVNRHPDERTLPK
GVVTVASNDIEAGQLQMRYLAEKLGGKGNLAIIMGDLAQNATHDRTEGVKQVLKDYPGIK
IVEQQSAEWQRNKGMDLTSNWLLAGSRFDAIVANNDEMAIGAAMALQQAGKAKGEVAIVG
IDGLPDGLAAIKRGMLVASVFQDPKAQATSAVQAALKMIKGEPVETDVWVPFQLIKPEQL
AVFEQHYK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory