PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_29390 (329 amino acids)

SeqID: AO356_29390 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1168476: Oligopeptide transport ATP-binding protein appF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_29390
MKRDITLELCDIRREFRINKGFFKPAAILKAVDGVSLRLMRGETLGLVGESGCGKSTLAK
LLLGLLAPTSGDVLVNGKHLAATDRKEMARHIQPIFQDPYSSLNPRKTLRDIITLPLIVH
DIGSPAERRKKTEAMLDVVGLPKRVIDSYPSQLSGGQRQRVAIARALIMRPDVLICDEPT
SALDVSVQAQILNLLQDLKREFGLTYLLISHNLAVIEHLADRVAVMYLGRIVEERTRESL
FAEPGHPYTRALLDSVLTPDPRLGIPEIGLHGTFPNPMSPPSGCAFHPRCPSCFAPCKTA
YPANDPIIGGNVRCHLHDSPAQTLELVHS