PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_30225 (546 amino acids)

SeqID: AO356_30225 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_30225
MQIYDYIVVGAGSSGCPVARGLSDDPRNNVLLIEAGPASDRFWVNTPAGMGKLYFNKSLN
WNFRTSPMEKLQGRRMYWPRGKLLGGSSSINGMVFIRGHQKDFDGWRALGNPGWGYEDVL
PYFKKMEHFERGGDEYRGANGPLWISDPVVKEKSSYDFIEAANRIGIPVTEDMNGALHDG
VGFMQHNIQDGQRMSTYRAFIEPVIERPNLTVRTGCELQRVLFEGRTAVGIEVLKSGRLE
RIYAAREVILSAGSLKTPQMLMLSGIGPRAELEKHAIPEVLNSPGVGQNLQDHFYIHTAF
RCTPDSSYNANLVGLRKYWEGFRYLMTRKGYLALGSSQVAAFVKSSPDEDYADLQISFRP
MTFQYFPDGTVDVERHPGLGVSVYQLRPSTTGTVTLRSTNPSDPADYTPNFLSSDYDVNA
VISGVRWIRKIMNSEPIKSRVVSEELPGLHIRTDEDIYNYLVETGNSAHHQGGTCKMGND
AMAVVDERLRVRGIERLRVVDASIMPFITSGNTNAPSIMIGVKAADLIREDAMARRASSS
PVETVG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory