PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO356_30385 (811 amino acids)

SeqID: AO356_30385 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 118555: Alcohol dehydrogenase [acceptor] precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.86
    Periplasmic            0.14
    Cytoplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.86

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO356_30385
MTPIGAEPDSLNAKRDTTKASRWVCRIFAIVLLMLGLALSIGGIILVADAGSAYYLITGL
AFITSAVLLWRGDARGIWVYAAMLVWTTAWSLWEVGFNGWQLAPRLIGPFVLGAVLLLPH
FTRLKPAPSTRKLPRGWPSFAGGLVAAIALGSVSHAFGPDAPDFPMLRRGVQSQAPAKLP
QPLANNERTDWQAYGNDQGGTRFSPLADIDTTNVSKLVKVWEADMAPVNGDLNAIEGTPI
MMGSSLYACDGNNGIHAFDAETGKELWRRDISNGVPQSGKPCRGVAYYKVPDANGFCSER
IYAPSHNPTLVALDAKTGEYCPGFGNNGAVDLTKGVAPYPHGLFYVSSAPQVIRGKIVVG
GGIPDGQYWGGPSGVIRAFDAVTGELAWAFDAGAPNRLGLPPEGQYYTPSTPNSWAPISA
DEKLGLVYLPVGNATPDAYGGQRRPYDEDISSAVIALDAETGRLRWKFQATHHDIWDYDV
ASQPTLLNWPTAKGMRPALIQPTKRGEIFVLDRETGEPIKAVEEQPVPQRDIAKGEWLSP
TQPASVELPAFRGPQLREKDMWGATPIDQMVCRIMFKQSRYEGQFTPITLDKNVLIDPGS
MGGVNWNGISLDVDRGLMIVNWTQVPDRIELVTREEATQRNFRIAPGLDAGGQAEQPMLD
TPYGAYRVNFLSQLGIPCNAPPWGLIGAVDLVSGKLIWSKPFGSPRDIGPFGLPTLVSIP
IGTPTAGGAVTTRGGLVFIGGAAEHTFRALDAATGRELWSSRLATSANATPMTYRSPVSG
RQFVVVAEGGRPHYRTKPGSKLVAFAIPDSK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory