PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS02405 (425 amino acids)

SeqID: AZOBR_RS02405 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 13626092: Isocitrate lyase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS02405
MSLDEKTKAALRAARFEGIKRDYTQDDVKRLSGSVKIEYTLAEMGAQRLWELLNTEPYIN
TLGALTGNQAMQAVKAGLKAIYLSGWQVAGDANLAGQMYPDQSLYPANSVPAVVERINNT
FKRADEIQTAEGKGDTYWFAPIIADAEAGFGGPLNVFELMKAMIKAGASGVHFEDQLASE
KKCGHLGGKVLIPTQQHIRTLNAARLAADTMGTSTIVLCRTDAESAQLITSDVDERDHPF
IDFDAGRTSEGFFRLKKGTGVDHCIARGLSYAPYSDLLWWETSRPNLEEAKRFAEAIRKE
FPNKLLAYNCSPSFNWKANLDEADIAKFQREIGAMGYKFQFVTLAGFHSLNYSAFKLAKG
YAARGMAAYSELQEAEFAAEAEGYTATKHQREVGTGYFDAVATAISGGQSSTTAYKDSTE
ADQFH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory