PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS02855 (412 amino acids)

SeqID: AZOBR_RS02855 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 584772: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS02855
MATTVSPLAPAGFPTLPPVAGVRIATANSGIRYKGRDDLMLAVLDEGTTVAGVLTKSLTC
SAPVIWCRDSLPRGSARAVVVNAGNANAFTGKAGDATVQATVEAAAKIAGCATDEVYVAS
TGVIGIPLAADAIAKVLPGMVPALKDDSAALEAGARAIMTTDTFAKGSTRQVAIGGTTVT
ISGFAKGSGMIAPDMATMLGFLFTDAAIAAPALQSMLSEFTERSFNAITVDGDTSTSDTL
LLFATGKAGNAPVTDAQAPELAAFRKALEEVMLDLALQIVRDGEGATKFVSITLVGAEND
VAAKRIALTVANSPLVKTALAGEDANWGRIVAAIGRAGERADRDLIKITIGGTLICAEGM
EVPGYDEAPVAAHMKGQEIDVHIDLGIGTGKSRVWTCDLTHGYIDINGSYRS