PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS03625 (404 amino acids)

SeqID: AZOBR_RS03625 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595698: 8-amino-7-oxononanoate synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS03625
MDYESFFRTQIASLKQDGRYRVFANLERHAGNFPKATFRDAAGKEREVTVWCSNDYLGMG
QNPVVLKAMHDAIDGVGAGAGGTRNISGTNIYHVLLERELADLHQKEAALLFTSGYVSND
ATLGTLGKLLPNCVILSDALNHNSMITGIRNSGAEKHIFRHNDPKHLDELLSQIAPDRPK
VVAFESVYSMDGDVAPIHDLCDVADKHGAMTYLDEVHAVGMYGPRGGGVAERDGAMDRLT
IIEGTLGKAFGVQGGYITGSTALVDCIRSFAAGFIFSTSLSPVLAAGALASIRYLKTSQT
ERDQHQERAATLKRLMAEAGLPVMPSASHIVPVMVGDAHRCKRASDELMERHDIYVQPIN
YPTVPRGGERLRFTPTPLHSDAEMARLVDALLDVWSRLDLRLAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory