PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS04075 (426 amino acids)

SeqID: AZOBR_RS04075 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2507237: Gamma-glutamyl phosphate reductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS04075
MSALLETTDALHDQMLALGRAARAAAAELATVPSPSKDQALRAAAAAIRARKAEIQAAND
ADVAAAKDRGLAGPMIERLALNDARIEAMAKGLEDIADFPDPIGGVIAEWTRPNGLAIQR
VRVPLGVIGIIYESRPNVTADAGGLCLKSGNAAILRGGSESIRSSHAIAACLADGLRAAG
LPEAAIQLVPTTDRAAVGHMLTMRDFIDVIVPRGGKSLIQRIAEESRIPVIKHLDGNNTV
YVDAGADPEKARKVVMNAKMRRTSICGAAETLLVDRKIADAMLPVLVKDLLDAGCAVRGD
AAAQAVDPRVTAVTAEDWDTEFLDAIIACGVVDGVDGAIDHINRHGSHHTDAIVTEDPAA
AERFLQRIDSGIVLWNASTQFADGGEFGMGAEIGISTDKFHARGPVGAEQLTSYKYVVRG
DGQTRP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory