PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS04900 (386 amino acids)

SeqID: AZOBR_RS04900 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS04900
MKITKATIYVINSEGLKPVIVKLDTDEGISGLGEVATAYGCGRTGAAGMIQDLCARFVIG
ADPTRINSLVGEMYDQSFWLKNPGGIAGAGLSAIEQALWDIRARALNVPVHELFGGRMRD
TLAYYANGWYFGATSVADLLRQAEAAVKDGHKALKMYPLARIQPNGTLRHTVNRYADDRD
AVNAALDIVAQVRRTVGADVTLMLDLAGGFSVSDTIRFVHGLEDLDIAFIEEICDPGDLG
ALEQVAAKTNIPIATGERQYLRYGFRDLLERRAVGILQPDIGNTGGFAETHKIAAMADAY
GVKVQPHVCGSSVAASIATHLSAVIPNFYVQEHFPYWARIPGWIEVATEPFESRLKNGAL
QIPDGPGYGVTLKDAVVREHIWAEVR