PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS05725 (495 amino acids)

SeqID: AZOBR_RS05725 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600548: glycolate oxidase subunit GlcD[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS05725
MRMPAPDDGVIARRREIIAALRAIVPGEGVIADESELRAYECDGLTAYRQLPMVVVLPST
VEQVSRVLRTCKEMGVKVVPRGAGTSLSGGALPLADGVLLGMGKFNRILDIDFANRCVVT
QPGVTNLGISTAVAHEGFYYAPDPSSQIACTIGGNIAENSGGVHCLKYGLTTNNVLGLEM
VLMDGTVLRLGGKHLDAGGYDLMGVVTGSEGLLGVVTEVTVRILKKPATARAVLIGFPTS
EQGGDCVAAIIAAGIIPGGMEMMDKPAIHAAEDFVHAGYPLDVEALLIVELDGPAAEVDH
LIDQVAEIARSKGCCYSRVSTSEEERLSFWAGRKAAFPAVGRISPDYYCMDGTIPRKALP
LVLHRMQEMSDRYALRVANVFHAGDGNLHPLILYDANKPGELERAEAFGNDILRLCVEVG
GVLTGEHGVGVEKRDLMTDQFDEVDLDQQQRIKCAFDPDGLLNPGKVFPKLHRCAELGRV
HIHKGELRFPDIPRF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory