PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS06255 (551 amino acids)

SeqID: AZOBR_RS06255 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS06255
VTDARHNPYETDLDQNAANTVPLSPLSFLRRTAAVYPQRIAVIHGPVRRTWAETYERCVR
LASALAKRGIGLGDTVAVMAPNTPESFEAHFGVPMTGAVLNALNIRLDAEALAFILEHGE
AKVLLTDREFSGVISKAVHMLEPKRRPIVIDIDDPQAKGGELIGEQTYEQFLETGDPAYE
WPMPADEWQAIALNYTSGTTGNPKGVVYHHRGAYLNAMGNVLTWAMPHHPVYLWTLPMFH
CNGWCFPWTVTAMAGTNVCVRTITAKGIYDALADLGVTHMCGAPIIMGLIVNAPEDQKRE
IPRGVKMMTAGAAPPAAVIEKIERMGFDVTHVYGLTEVYGPVTICAWHEHWNDLPLEERA
ALKARQGVNYATLEGLMVADPNTLQPTRKDGVTMGEIFMRGNTVMKGYLKNPRATQEAFS
GGWFHTGDLGVWHADGYIELKDRSKDIIISGGENISTIEVESVLYKHPDIVEAAVVARPD
EKWGETPCAFVTVKEGKQLTEAEVIAYCREHLAHFKCPRTVVFTALPKTSTGKIQKYVLR
DQARALNGAKV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory