PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS07040 (455 amino acids)

SeqID: AZOBR_RS07040 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599943: phosphoglucosamine mutase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS07040
MTRHLFGTDGIRGTANIDPMTAETALRVAMASALQFRRGDHRHRVVIGKDTRLSGYLLEP
ALTAGFISMGMDVVLLGPLPTPAVAMLTRSLRADLGVMISASHNPYQDNGIKLFGPDGYK
LSDAVELAIETRMGQPFAPDLAGSADLGRASRLEDSTGRYIEYVKNTFPRGLRLDGLRIV
VDCANGAAYRVAPKVLYELGADVIPVGVNPDGLNINKDCGATATRTLQEQVVAHGAHLGI
ALDGDADRLIMVDEAGRVVDGDQVMALIASSWAQAQTLKGGGVVATVMSNLGMERHLQGL
GIALVRTPVGDRYVVEHMREHGYNVGGEQSGHVVLSDYSTTGDGLIAALQVLAVLIQSGG
RAASEVCQVFAPVPQKLTNVRFAAGSKPLEIASVQAAIRDGEARLNGSGRILIRKSGTEP
VIRVMAEGDDEGLVHAVVADIVGAITDAARLETAS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory