PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS07965 (589 amino acids)

SeqID: AZOBR_RS07965 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS07965
MARMMAIEAAVHVLEKEGVSVCFGVPGAAINPFYAALQRNGRIGHVLARHVEGASHMAEG
YTRAKAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIP
SIAKPVAKWAVTVLEPGQVPYAFQQAFHLMRSGRPGPVLLDLPIDVQMAEIEFDPDAYEP
LPTYKPAATRAQVEKALAMLNAAERPLLVAGGGIINADASDRLVEFAEIAGLPVIPTLMA
WGAIPDDHPLMAGMVGLQTAHRYGNAAMLASDFVLGIGNRWANRHTGSVDVYTKGRKFVH
VDIEPTQIGRVFAPDLGIVSDAGAALDLFIEVAKEWKAAGKLRDWSEWVKTCQVRKRSML
RRSDFANVPIKPQRVYQEMNSAFGEDVCYVSTIGLSQIAGAQFLHVYKPRHWINCGQAGP
LGWTLPAALGVRVADPKRKIVALSGDYDFQFLIEELAVGAQFKLPYIHVLVNNSYLGLIR
QAQRAFQMDFQVQLSFENINAPEIGVYGVDHVAVAEGLGCKAIRVTDPDNLQSAFAQAQQ
WMDEFQVPVVVEVILERVTNIAMGTEINNITEFEDVLDVPADEPELVRV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory