PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS08845 (366 amino acids)

SeqID: AZOBR_RS08845 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15595498: polyamine transport protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS08845
MKRFALSVIGAVAAIAIAGPALAQAKKPVNIYIWNDYLGESTLADFTKATGYDTKVDLYD
SLELLEQKVLVGKSGYDVIVPTAEPTLSRMIQAKVVAPLDKAKIPNLKNVDPKVLKLLEN
SDPGNKFAVPYLGGTVGIAIIPEKIKAVAPDVPLDSWDLIFKPEVAKKVAACGITVMDSA
IDVIPSVLNYLGLDPNSEKKEDLDKVEKTLLAVRPYIKQFVTGQNINILAGGDACVVMAY
NGDAIQGAARAEEAKNGVKVEYITPKEGVQVWWDTLAIPADAPNKEGAHAYINFILDPAN
IAAVSNTVSYANAVPASLASVDEGVKTNPAVFLPENSSLKLFALKSIKQTTDRARTRVWT
KVKTGK